Package: argosTrack 1.2.2-1

argosTrack: Fit Movement Models to Argos Data for Marine Animals

Fits various state-space animal movement models to Argos data. Models are fitted by maximum likelihood with the Laplace approximation via 'TMB' and 'nlminb'. Functionality to visualize and simulate the models is available.

Authors:Christoffer Moesgaard Albertsen [aut, cre]

argosTrack_1.2.2-1.tar.gz
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 |argosTrack.html✨
argosTrack/json (API)
NEWS

# Install 'argosTrack' in R:
install.packages('argosTrack', repos = c('https://calbertsen.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/calbertsen/argostrack/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

animalanimal-behaviorargos-datac-plus-plusgps-datamovementmovement-ecologysolar-geolocatortracking

3.92 score 12 stars 14 scripts 19 exports 5 dependencies

Last updated 4 years agofrom:d09d54082b. Checks:ERROR: 1 NOTE: 5 OK: 3. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 22 2024
R-4.5-win-x86_64NOTEOct 23 2024
R-4.5-linux-x86_64NOTEOct 23 2024
R-4.4-win-x86_64NOTENov 22 2024
R-4.4-mac-x86_64NOTENov 22 2024
R-4.4-mac-aarch64NOTENov 22 2024
R-4.3-win-x86_64OKNov 22 2024
R-4.3-mac-x86_64OKNov 22 2024
R-4.3-mac-aarch64OKNov 22 2024

Exports:AnimalargosTrackCTCRWDCRWDIRACDSBHNDSBWfitTrackGDCRWgetTrackMeasurementObservationOULplotLatplotLonplotMaproseplotRWsimTrack

Dependencies:latticeMatrixRcppRcppEigenTMB

Introduction to argosTrack

Christoffer Moesgaard Albertsen

Rendered fromintro-argostrack.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2018-09-17
Started: 2018-08-09

Readme and manuals

Help Manual

Help pageTopics
Track data from the adult ringed seal with tag id 106373.adult_ringed_seal
Construct an Animal objectAnimal
A Reference Class for combining animal movement model parts.Animal-class
Defunct functions in the argosTrack packageargosTrack-defunct-package argosTrack argosTrack-defunct
Create a CSB movement model objectCSB
Create a CTCRW movement model objectCTCRW
A Reference Class for fitting a Continuous Time Correlated Random Walk model.CTCRW-class
Create a DCRW movement model objectDCRW
A Reference Class for fitting a discrete time first Difference Correlated Random Walk model.DCRW-class
Create a DIRAC movement model objectDIRAC
A Reference Class for fitting a Dirac movement model.DIRAC-class
Create a DSBHN movement model objectDSBHN
A Reference Class for fitting a Discrete time Step-length/Bearings model with Half Normal distributed steps.DSBHN-class
Create a DSBW movement model objectDSBW
A Reference Class for fitting a Discrete time Step-length/Bearings model with Weibull distributed steps.DSBW-class
Generic function to fit movement models.fitTrack
Fits a state-space movement model to animal datafitTrack,Animal-method
Create a GDCRW movement model objectGDCRW
A Reference Class for fitting a Generalized first Difference Correlated Random Walk model.GDCRW-class
Generic function to extract movement track.getTrack
Extracts track from animal datagetTrack,Animal-method
Extracts track from animal datagetTrack,Movement-method
Extracts track from animal datagetTrack,Observation-method
Construct a Measurement objectMeasurement
A Reference Class for specifying a measurement model.Measurement-class
An abstract Reference Class for fitting a Movement model.Movement-class
A Reference Class for argosTrack observations.Observation Observation-class
Create an OUL movement model objectOUL
A Reference Class for fitting an Ornstein-Uhlenbeck Location model.OUL-class
Plotting an Animal objectplot.Animal
Plotting a Movement objectplot.Movement
Generic latitude plotplotLat
Latitude plot for an Animal reference class objectplotLat,Animal-method
Latitude plot for a Movement reference class objectplotLat,Movement-method
Latitude plot for an Observation reference class objectplotLat,Observation-method
Generic longitude plotplotLon
Longitude plot for an Animal reference class objectplotLon,Animal-method
Longitude plot for a Movement reference class objectplotLon,Movement-method
Longitude plot for an Observation reference class objectplotLon,Observation-method
Generic map plotplotMap
Map plot for an Animal reference class objectplotMap,Animal-method
Map plot for a Movement reference class objectplotMap,Movement-method
Map plot for an Observation reference class objectplotMap,Observation-method
Generic roseplotroseplot
Roseplot for Animal reference class objectroseplot,Animal-method
Roseplot for Movement reference class objectroseplot,Movement-method
Create a RW movement model objectRW
A Reference Class for fitting a Random Walk model.RW-class
Generic function to simulate trackssimTrack
Simulate from an Animal state-space modelsimTrack,Animal-method
Simulate from a measurement model with observation informationsimTrack,Measurement-method
Simulate from a movement modelsimTrack,Movement-method
Track data from the adult ringed seal with tag id 43847.subadult_ringed_seal