Package: argosTrack 1.2.2-1

argosTrack: Fit Movement Models to Argos Data for Marine Animals

Fits various state-space animal movement models to Argos data. Models are fitted by maximum likelihood with the Laplace approximation via 'TMB' and 'nlminb'. Functionality to visualize and simulate the models is available.

Authors:Christoffer Moesgaard Albertsen [aut, cre]

argosTrack_1.2.2-1.tar.gz
argosTrack_1.2.2-1.zip(r-4.5)argosTrack_1.2.2-1.zip(r-4.4)argosTrack_1.2.2-1.zip(r-4.3)
argosTrack_1.2.2-1.tgz(r-4.4-x86_64)argosTrack_1.2.2-1.tgz(r-4.4-arm64)argosTrack_1.2.2-1.tgz(r-4.3-x86_64)argosTrack_1.2.2-1.tgz(r-4.3-arm64)
argosTrack_1.2.2-1.tar.gz(r-4.5-noble)argosTrack_1.2.2-1.tar.gz(r-4.4-noble)
argosTrack_1.2.2-1.tgz(r-4.4-emscripten)argosTrack_1.2.2-1.tgz(r-4.3-emscripten)
|argosTrack.html✨
argosTrack/json (API)
NEWS

# Install 'argosTrack' in R:

install.packages('argosTrack', repos = c('https://calbertsen.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/calbertsen/argostrack/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

adult_ringed_seal - Track data from the adult ringed seal with tag id 106373.
subadult_ringed_seal - Track data from the adult ringed seal with tag id 43847.

On CRAN:

animal animal-behavior argos-data c-plus-plus gps-data movement movement-ecology solar-geolocator tracking

19 exports 12 stars 1.24 score 5 dependencies 14 scripts

Last updated 4 years agofrom:d09d54082b. Checks:ERROR: 1 NOTE: 5 OK: 3. Indexed: yes.

Target	Result	Date
Doc / Vignettes	FAIL	Aug 24 2024
R-4.5-win-x86_64	NOTE	Aug 24 2024
R-4.5-linux-x86_64	NOTE	Aug 24 2024
R-4.4-win-x86_64	NOTE	Aug 24 2024
R-4.4-mac-x86_64	NOTE	Aug 24 2024
R-4.4-mac-aarch64	NOTE	Aug 24 2024
R-4.3-win-x86_64	OK	Aug 24 2024
R-4.3-mac-x86_64	OK	Aug 24 2024
R-4.3-mac-aarch64	OK	Aug 24 2024

Exports:Animal argosTrack CTCRW DCRW DIRAC DSBHN DSBW fitTrack GDCRW getTrack Measurement Observation OUL plotLat plotLon plotMap roseplot RW simTrack

Dependencies:lattice Matrix Rcpp RcppEigen TMB

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Introduction to argosTrack

Christoffer Moesgaard Albertsen

Rendered fromintro-argostrack.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2018-09-17
Started: 2018-08-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Track data from the adult ringed seal with tag id 106373.	adult_ringed_seal
Construct an Animal object	Animal
A Reference Class for combining animal movement model parts.	Animal-class
Defunct functions in the argosTrack package	argosTrack-defunct-package argosTrack argosTrack-defunct
Create a CSB movement model object	CSB
Create a CTCRW movement model object	CTCRW
A Reference Class for fitting a Continuous Time Correlated Random Walk model.	CTCRW-class
Create a DCRW movement model object	DCRW
A Reference Class for fitting a discrete time first Difference Correlated Random Walk model.	DCRW-class
Create a DIRAC movement model object	DIRAC
A Reference Class for fitting a Dirac movement model.	DIRAC-class
Create a DSBHN movement model object	DSBHN
A Reference Class for fitting a Discrete time Step-length/Bearings model with Half Normal distributed steps.	DSBHN-class
Create a DSBW movement model object	DSBW
A Reference Class for fitting a Discrete time Step-length/Bearings model with Weibull distributed steps.	DSBW-class
Generic function to fit movement models.	fitTrack
Fits a state-space movement model to animal data	fitTrack,Animal-method
Create a GDCRW movement model object	GDCRW
A Reference Class for fitting a Generalized first Difference Correlated Random Walk model.	GDCRW-class
Generic function to extract movement track.	getTrack
Extracts track from animal data	getTrack,Animal-method
Extracts track from animal data	getTrack,Movement-method
Extracts track from animal data	getTrack,Observation-method
Construct a Measurement object	Measurement
A Reference Class for specifying a measurement model.	Measurement-class
An abstract Reference Class for fitting a Movement model.	Movement-class
A Reference Class for argosTrack observations.	Observation Observation-class
Create an OUL movement model object	OUL
A Reference Class for fitting an Ornstein-Uhlenbeck Location model.	OUL-class
Plotting an Animal object	plot.Animal
Plotting a Movement object	plot.Movement
Generic latitude plot	plotLat
Latitude plot for an Animal reference class object	plotLat,Animal-method
Latitude plot for a Movement reference class object	plotLat,Movement-method
Latitude plot for an Observation reference class object	plotLat,Observation-method
Generic longitude plot	plotLon
Longitude plot for an Animal reference class object	plotLon,Animal-method
Longitude plot for a Movement reference class object	plotLon,Movement-method
Longitude plot for an Observation reference class object	plotLon,Observation-method
Generic map plot	plotMap
Map plot for an Animal reference class object	plotMap,Animal-method
Map plot for a Movement reference class object	plotMap,Movement-method
Map plot for an Observation reference class object	plotMap,Observation-method
Generic roseplot	roseplot
Roseplot for Animal reference class object	roseplot,Animal-method
Roseplot for Movement reference class object	roseplot,Movement-method
Create a RW movement model object	RW
A Reference Class for fitting a Random Walk model.	RW-class
Generic function to simulate tracks	simTrack
Simulate from an Animal state-space model	simTrack,Animal-method
Simulate from a measurement model with observation information	simTrack,Measurement-method
Simulate from a movement model	simTrack,Movement-method
Track data from the adult ringed seal with tag id 43847.	subadult_ringed_seal