{ "_id": "6a7d4229386e8c88d3ada6e9", "Package": "otoclass", "Type": "Package", "Title": "Otolith Classification and Proportion Estimation", "Version": "0.8.0", "Date": "2019-03-19", "Authors@R": "person(c(\"Christoffer\",\"Moesgaard\"), \"Albertsen\",\nemail = \"cmoe@aqua.dtu.dk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0088-4363\"))", "Maintainer": "Christoffer Moesgaard Albertsen ", "Description": "Methods for classification and analysis of otoliths along\nwith methods for estimating species proportions in samples.", "License": "GPL-2", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "cmake make libjpeg-dev libpng-dev libtiff-dev", "Repository": "https://calbertsen.r-universe.dev", "Date/Publication": "2024-04-20 18:30:04 UTC", "RemoteUrl": "https://github.com/calbertsen/otoclass", "RemoteRef": "feature/multi_group", "RemoteSha": "7063e7b3cb3502c3d1356043600bdfed84225603", "RemoteSubdir": "otoclass", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-08-13 03:55:19 UTC", "User": "root" }, "Author": "Christoffer Moesgaard Albertsen [aut, cre] (ORCID:\n)", "_user": "calbertsen", "_type": "src", "_file": "otoclass_0.8.0.tar.gz", "_fileid": "https://r2.ropensci.org/6be5d9330e1cb8863f30c868b3e6232f365279ca398e9733ff252d444dc3f952", "_filesize": 1138927, "_sha256": "6be5d9330e1cb8863f30c868b3e6232f365279ca398e9733ff252d444dc3f952", "_expires": "2026-11-21T04:03:51.000Z", "_created": "2026-08-13T03:55:19.000Z", "_published": "2026-10-14T06:32:47.856Z", "_jobs": [ { "job": 94338966740, "time": 215, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "9167813105" }, { "job": 94338966783, "time": 252, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "9167824920" }, { "job": 94338966776, "time": 214, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "9167812922" }, { "job": 94338966791, "time": 246, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "9167823084" }, { "job": 94338966711, "time": 200, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "9167808217" }, { "job": 94338966870, "time": 376, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "9167864279" }, { "job": 94338966829, "time": 275, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "9167832269" }, { "job": 94338966727, "time": 291, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "9167837609" }, { "job": 94338286143, "time": 263, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "9167743039" }, { "job": 94338966693, "time": 174, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "9167800547" }, { "job": 94338966867, "time": 290, "config": "windows-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "9167836997" }, { "job": 94338966754, "time": 309, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "9167843116" }, { "job": 94338966789, "time": 276, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "9167832832" }, { "job": 94338966773, "time": 291, "config": "windows-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "9167837126" }, { "job": 94338966796, "time": 270, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "9167830834" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694", "_status": "success", "_upstream": "https://github.com/calbertsen/otoclass", "_commit": { "id": "7063e7b3cb3502c3d1356043600bdfed84225603", "author": "Christoffer Moesgaard Albertsen ", "committer": "Christoffer Moesgaard Albertsen ", "message": "Updates\n", "time": 1713637804 }, "_maintainer": { "name": "Christoffer Moesgaard Albertsen", "email": "cmoe@aqua.dtu.dk", "login": "calbertsen", "description": "", "uuid": 7665065, "orcid": "0000-0003-0088-4363" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "TMB", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.11.2", "role": "Imports" }, { "package": "TMB", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "jpeg", "role": "Imports" }, { "package": "png", "role": "Imports" }, { "package": "tiff", "role": "Imports" }, { "package": "Matrix", "version": ">= 1.5-0", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "expm", "role": "Imports" }, { "package": "lme4", "role": "Imports" }, { "package": "shiny", "role": "Suggests" } ], "_owner": "calbertsen", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "contour-detection", "otolith-classification", "otolith-shape", "otoliths", "cpp" ], "_stars": 3, "_contributors": [ { "user": "calbertsen", "count": 82, "uuid": 7665065 } ], "_userbio": { "uuid": 7665065, "type": "user", "name": "Christoffer Moesgaard Albertsen", "followers": 18 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/otoclass" }, "_devurl": "https://github.com/calbertsen/otoclass", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/otoclass.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "assign_unknown", "backwardSelection", "biascorrect", "commonMean", "crossval", "efd", "efd2coord", "fcbf", "flip", "forwardSelection", "fs", "gen2PCA", "getGroupMeans", "getGroupProportion", "groupMean", "groupProportion", "interpolate", "knn", "leaveoneout", "mlcd", "mlld", "normalize_image", "projection", "read_image", "read_images", "read.gen", "rotate" ], "_help": [ { "page": "as.otolith_contour_list", "title": "Convert to otolith_contour_list", "topics": [ "as.otolith_contour_list" ] }, { "page": "assign_unknown", "title": "Assign unknown contours by binomial regression on elliptic fourier descriptors", "topics": [ "assign_unknown" ] }, { "page": "efd", "title": "Calculate Elliptical Fourier Descriptors", "topics": [ "efd", "efd.matrix", "efd.otolith_contour", "efd.otolith_contour_list", "efd.otolith_image" ] }, { "page": "efd2coord", "title": "Calculate XY-coordinates from Elliptical Fourier Descriptors", "topics": [ "efd2coord" ] }, { "page": "efd2coordOld", "title": "Calculate XY-coordinates from Elliptical Fourier Descriptors", "topics": [ "efd2coordOld" ] }, { "page": "fcbf", "title": "Fast Correlation Based Filter for Feature Selection in High-Dimensional Data", "topics": [ "fcbf" ] }, { "page": "flip", "title": "Flip an otolith", "topics": [ "flip" ] }, { "page": "fs", "title": "Fourier Series Basis for Splines", "topics": [ "fs" ] }, { "page": "gen2PCA", "title": "Prepare allele matrix for PCA analysis", "topics": [ "gen2PCA" ] }, { "page": "getGroupMeans", "title": "Calculate group means for a data frame of covariates", "topics": [ "getGroupMeans", "getGroupMeans.mlld" ] }, { "page": "getGroupProportion", "title": "Calculate group proportions for a data frame of covariates", "topics": [ "getGroupProportion", "getGroupProportion.mlld" ] }, { "page": "getPixelMatrix", "title": "Get a pixel matrix from an image file", "topics": [ "getPixelMatrix" ] }, { "page": "interpolate", "title": "Interpolate otolith coordinates through EFDs", "topics": [ "interpolate" ] }, { "page": "knn", "title": "k Nearest Neighbour", "topics": [ "knn" ] }, { "page": "mlcd", "title": "Maximum Likelihood Contour Discrimination", "topics": [ "mlcd" ] }, { "page": "mlld", "title": "Maximum likelihood linear discrimination", "topics": [ "mlld" ] }, { "page": "normalize_image", "title": "Normalize an Otolith Image", "topics": [ "normalize_image" ] }, { "page": "plot.otolith_contour", "title": "Plot otolith contour", "topics": [ "plot.otolith_contour" ] }, { "page": "plot.otolith_contour_list", "title": "Plot otolith contour list", "topics": [ "plot.otolith_contour_list" ] }, { "page": "plot.otolith_image", "title": "Plot otolith image", "topics": [ "plot.otolith_image" ] }, { "page": "polygon_area", "title": "Signed area of a closed polygon", "topics": [ "polygon_area" ] }, { "page": "print.otolith_contour", "title": "Print otolith image contour", "topics": [ "print.otolith_contour" ] }, { "page": "print.otolith_image", "title": "Print otolith image", "topics": [ "print.otolith_image" ] }, { "page": "projection", "title": "LDA-like projection", "topics": [ "projection" ] }, { "page": "read_image", "title": "Read Otolith Images and Extract Contours", "topics": [ "read_image" ] }, { "page": "read_images", "title": "Extract otolith contours from images", "topics": [ "read_images" ] }, { "page": "read.gen", "title": "Read genepop data files", "topics": [ "read.gen" ] }, { "page": "rotate", "title": "Rotate an otolith", "topics": [ "rotate" ] }, { "page": "runShinyExample", "title": "Run shiny example included in the package", "topics": [ "runShinyExample" ] } ], "_readme": "https://github.com/calbertsen/otoclass/raw/feature/multi_group/README.md", "_rundeps": [ "boot", "expm", "jpeg", "lattice", "lme4", "MASS", "Matrix", "minqa", "nlme", "nloptr", "png", "rbibutils", "Rcpp", "RcppEigen", "Rdpack", "reformulas", "tiff", "TMB" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 2.1760912590556813, "_indexed": true, "_nocasepkg": "otoclass", "_universes": [ "calbertsen" ], "_failure": { "version": "0.8.0", "commit": { "id": "7063e7b3cb3502c3d1356043600bdfed84225603", "author": "Christoffer Moesgaard Albertsen ", "committer": "Christoffer Moesgaard Albertsen ", "message": "Updates\n", "time": 1713637804 }, "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/38152192664", "date": "2026-10-14T06:32:47.851Z", "job": { "job": 115715053910, "time": 215, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "11874164826" } }, "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8.0", "date": "2026-08-13T03:58:48.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/b8c28a1e1ed69c771f4d540cb91bbcbfd41ea47fc1edd8a53500e346d7a4b5c4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.7.0", "os": "linux", "version": "0.8.0", "date": "2026-08-13T03:59:02.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/90eb50baf8e58f91cd68254a107a18a01544c27cae545168d69b2956efb74184", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "linux", "version": "0.8.0", "date": "2026-08-13T03:58:48.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/cf2f66293a57bbace7543514775f763a0c2ca136c393f1cee8a649e2df4d7089", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "linux", "version": "0.8.0", "date": "2026-08-13T03:59:12.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/fd189b26cf515d49d7e423e51a14e0d7748081462e17ef8dd27c92070daf9563", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.5.3", "os": "mac", "version": "0.8.0", "date": "2026-08-13T03:58:24.000Z", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/d1404419d2031d23ec40983e7cab4832e2fd5831ea87ce47163a543cf45bb764", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.5.3", "os": "mac", "version": "0.8.0", "date": "2026-08-13T03:59:40.000Z", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/db6fee5129ab5b548a67bf2304932a8bc5e9d1cc3e6af0defd3534b2809afeec", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "mac", "version": "0.8.0", "date": "2026-08-13T03:59:00.000Z", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/e8764ca5b6753f8f1d636249dfb98d0e03226bb53aa97e4e468b1086532619f1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "mac", "version": "0.8.0", "date": "2026-08-13T03:59:12.000Z", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/5edf9e7b0463b1360ac507a119fb88657b7c735575aba8fd130525c3742ce3b0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.0", "os": "wasm", "version": "0.8.0", "date": "2026-08-13T03:59:09.000Z", "arch": "emscripten", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/d95033acbcfc122e6a923f0c1c07f82acf1229ba7f5f785742378c8a089756db", "status": "success", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.7.0", "os": "win", "version": "0.8.0", "date": "2026-08-13T03:59:37.000Z", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/3905ccd129f8a22cd2b7b9e67f34e39ecfe48e66b86c2430792112dac9aa4662", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.7.0", "os": "win", "version": "0.8.0", "date": "2026-08-13T03:58:08.000Z", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/9375b893960d277fe8eca0412d76e3acb814b54b5916196c2af8b7f66c2134a5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.5.3", "os": "win", "version": "0.8.0", "date": "2026-08-13T03:58:16.000Z", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/53bc3c76dc5c05d6dcd62ddfd9b092c4826135a15ceee2ad7299a62cf0f306d4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "win", "version": "0.8.0", "date": "2026-08-13T03:59:44.000Z", "arch": "aarch64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/0d7e9cc30bc3f6a4fd729ceac6e2b13cd3c77b9761a392bb2a47872745bb67d0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" }, { "r": "4.6.1", "os": "win", "version": "0.8.0", "date": "2026-08-13T03:57:57.000Z", "arch": "x86_64", "commit": "7063e7b3cb3502c3d1356043600bdfed84225603", "fileid": "https://r2.ropensci.org/18ad5165cb7d9800f2df665020c47b85c913ffb70f1a560f4ae859b38703a1f2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/calbertsen/actions/runs/31665226694" } ] }